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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ScreenR
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package to Perform High Throughput Biological Screening"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-dplyr
r-edger
r-ggplot2
r-ggvenn
r-limma
r-magrittr
r-patchwork
r-purrr
r-rlang
r-scales
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('947b588b575df025e5df6961811804ff')
b2sums=('d8bf63fe91e30be32f78d87f68ff92bb91b142aa667a7a790310ee467fcc3e2e23c894f43cafb62bbda8b5c98690ca67e603ce8d25091d47727bcc04e8b69d9a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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