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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ScreenR
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package to Perform High Throughput Biological Screening"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-dplyr
r-edger
r-ggplot2
r-ggvenn
r-limma
r-magrittr
r-patchwork
r-purrr
r-rlang
r-scales
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ecd48cc5e2c98fc05d6214e527525d20')
b2sums=('01613e8d6f720440b46935aa8d6c9aa6ceb53c14adf8ea7c24f8a7f8d3148cf8d18e6451831045b91e82f4bc49df09d21021b701dd3c09eeb4101020f8943f5d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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