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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scRNAseqApp
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A single-cell RNAseq Shiny app-package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-bibtex
r-bslib
r-circlize
r-complexheatmap
r-data.table
r-dbi
r-dt
r-genomeinfodb
r-genomicranges
r-ggdendro
r-ggforce
r-ggplot2
r-ggrepel
r-ggridges
r-gridextra
r-htmltools
r-iranges
r-jsonlite
r-magrittr
r-patchwork
r-plotly
r-rcolorbrewer
r-refmanager
r-rhdf5
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-scales
r-scrypt
r-seurat
r-seuratobject
r-shiny
r-shinyhelper
r-shinymanager
r-singlecellexperiment
r-slingshot
r-sortable
r-xfun
r-xml2
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cad3212d6fa3ad4efbd99dc2b489a441')
b2sums=('24a01680d7698164289e1e4200807241e46aefe21caf61175f7ec8b016c4d913c4eca919948c0ba4e4a91749de58f20f0e2527b87ed1493d47190a5784bd4122')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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