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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scTreeViz
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-clustree
r-data.table
r-digest
r-epivizr
r-epivizrdata
r-epivizrserver
r-ggplot2
r-ggraph
r-httr
r-igraph
r-rtsne
r-s4vectors
r-scater
r-scran
r-seurat
r-singlecellexperiment
r-summarizedexperiment
r-sys
)
optdepends=(
r-biocstyle
r-epivizrstandalone
r-genomeinfodb
r-knitr
r-metagenomeseq
r-msd16s
r-rmarkdown
r-sc3
r-scrnaseq
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b732dc1656ca78ffa1ec94d02f8c9b9d566f63abfc5c54a8c3d40e6e4e495a1a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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