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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=seq.hotSPOT
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Targeted sequencing panel design based on mutation hotspots"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-hash
r-r.utils
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('afe353f38d5ed43da4c53adb6c100a9a')
b2sums=('2fcdd8f60a775c3d998021c96d0a378703f8f83b237de9acd08391fb8e79dc0f86469c0c9c8d2e8cc8878ab1b9b3cc1a202412b447e0c3641f131598c252506e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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