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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=seqArchR
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Identify Different Architectures of Sequence Elements"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
python-packaging
python-scikit-learn
r-biocparallel
r-biostrings
r-cli
r-cvtools
r-fpc
r-ggplot2
r-ggseqlogo
r-matrixstats
r-prettyunits
r-reshape2
r-reticulate
)
checkdepends=(
r-testthat
r-vdiffr
)
optdepends=(
r-biocstyle
r-covr
r-cowplot
r-hopach
r-knitr
r-rmarkdown
r-testthat
r-vdiffr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6d12e6fcb163cc682986160f06cc63c9')
b2sums=('d73cc31ed4c3c82bdf0d6ff6b9dd02365e3da339e8db2cabc5c782d20ef110e3ccd43805fc931f7ab38e1c3923168fc80186d61184c2fb3b39545c0ce550924f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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