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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=seqArchRplus
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Downstream analyses of promoter sequence architectures and HTML report generation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-biostrings
r-bsgenome
r-chipseeker
r-cli
r-clusterprofiler
r-cowplot
r-factoextra
r-genomeinfodb
r-genomicranges
r-ggimage
r-ggplot2
r-gridextra
r-heatmaps
r-iranges
r-magick
r-rcolorbrewer
r-s4vectors
r-scales
r-seqarchr
r-seqpattern
)
optdepends=(
r-biocstyle
r-bsgenome.dmelanogaster.ucsc.dm6
r-cager
r-covr
r-knitr
r-org.dm.eg.db
r-pdftools
r-rmarkdown
r-slickr
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-xfun
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('384b6ab7e09a3c997ec64c77ba988618')
b2sums=('5ba4309064764a334d35bc04bb01d5cd05376e06e80f0507bc921833b1fa5511865605f13ed2c4f6508a057dc8b7cf7810fc0fc149ac1a28593d854b94c70487')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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