blob: 0c31ece9e3a1a8f1b155656c0f019acffc0243f4 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=seqArchRplus
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Downstream analyses of promoter sequence architectures and HTML report generation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-biostrings
r-bsgenome
r-chipseeker
r-cli
r-clusterprofiler
r-cowplot
r-factoextra
r-genomeinfodb
r-genomicranges
r-ggimage
r-ggplot2
r-gridextra
r-heatmaps
r-iranges
r-magick
r-rcolorbrewer
r-s4vectors
r-scales
r-seqarchr
r-seqpattern
)
optdepends=(
r-biocstyle
r-bsgenome.dmelanogaster.ucsc.dm6
r-cager
r-covr
r-knitr
r-org.dm.eg.db
r-pdftools
r-rmarkdown
r-slickr
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-xfun
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e92db630da3de17bfeb536647b178e59')
b2sums=('026f8345d60ffdb792bb29b8d0eca27eb9f4a835ab4789e2f809885126757441f35a08ed5c04ea02e80c5d60744ef2001bd41855a776e317ff9e5a5790a0e434')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|