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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=SGCP
_pkgver=1.4.4
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a spectral self-learning method for clustering genes in co-expression networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotate
r-caret
r-desctools
r-dplyr
r-expm
r-genefilter
r-ggplot2
r-ggridges
r-go.db
r-gostats
r-graph
r-openxlsx
r-org.hs.eg.db
r-plyr
r-rcolorbrewer
r-reshape2
r-rgraphviz
r-rspectra
r-summarizedexperiment
r-xtable
)
optdepends=(
r-biocmanager
r-biocstyle
r-devtools
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('41a65113ffafc44ba00d73c4d5691547')
b2sums=('30368802421fe2851d816aac1807d543a9cd85500b37816b6a8b62c38b334f77de1ad29374c749f169beecaafeb958ad0ac656c4b72eee0188e76cae687727e0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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