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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Signac
_pkgver=1.13.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Analysis of Single-Cell Chromatin Data"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('MIT')
depends=(
r-biocgenerics
r-data.table
r-dplyr
r-fastmatch
r-future
r-future.apply
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-irlba
r-lifecycle
r-patchwork
r-pbapply
r-rcpp
r-rcpproll
r-rlang
r-rsamtools
r-s4vectors
r-scales
r-seuratobject
r-stringi
r-tidyr
r-tidyselect
r-vctrs
zlib
)
checkdepends=(
r-testthat
)
optdepends=(
r-biostrings
r-biovizbase
r-bsgenome
r-chromvar
r-ggforce
r-ggrepel
r-ggseqlogo
r-lsa
r-miniui
r-motifmatchr
r-rtracklayer
r-seurat
r-shiny
r-summarizedexperiment
r-testthat
r-tfbstools
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a0cb5bebb0496441c31efa4d50ee90f4')
b2sums=('006d618df85a9ebcba6117f65f4889ecbe60a28b1c56f559ebc43bc44158c77f43b6103342198f76931c5945fe796aa38f1d8165f445406b6fa37b6de74327f7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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