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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=signatureSearch
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Environment for Gene Expression Searching Combined with Functional Enrichment Analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biocparallel
r-clusterprofiler
r-data.table
r-delayedarray
r-dose
r-dplyr
r-experimenthub
r-fastmatch
r-fgsea
r-ggplot2
r-gseabase
r-hdf5array
r-magrittr
r-org.hs.eg.db
r-qvalue
r-rcpp
r-reactome.db
r-readr
r-reshape2
r-rhdf5
r-rsqlite
r-scales
r-summarizedexperiment
r-tibble
r-visnetwork
)
optdepends=(
r-biocstyle
r-dt
r-knitr
r-rmarkdown
r-signaturesearchdata
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('64d0a6c46a9b9a93247feb87f68bfb3d4e05e5f4b7f3bb7a2700b1e28eb162ac')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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