PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=SigsPack
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mutational Signature Estimation for Single Samples"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-biobase
  r-biostrings
  r-bsgenome
  r-genomeinfodb
  r-genomicranges
  r-quadprog
  r-rtracklayer
  r-summarizedexperiment
  r-variantannotation
)
optdepends=(
  r-biocstyle
  r-bsgenome.hsapiens.ucsc.hg19
  r-iranges
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f4107a1fa2e4d7dc1d6c9f875ea8604c')
b2sums=('259186d9acd1a99155b28d49356226e3e8d0fe607d39e7fb52c4862e498ad97c8ae34ccb9dbf573ee0427b67b108d6783f676e07b22dd88051761d301548eeb3')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}