PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=similaRpeak
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Metrics to estimate a level of similarity between two ChIP-Seq profiles"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-r6
)
optdepends=(
  r-biocgenerics
  r-biocstyle
  r-genomicalignments
  r-knitr
  r-rmarkdown
  r-rsamtools
  r-rtracklayer
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6f26cfd6d30be5f40b4a7713a9529bc7')
b2sums=('f960d04f48f430dd1af9ddae1e25cc168f22dbf6e238f60caec46de7f3ed70150336a9380b8d19c71ce1bc75749d576846843af7804b4c3889b46da1a04d00e0')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}