blob: 2f3e25745e02bdd6364d5d3b6a0193ed3d1e454e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=simona
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Semantic Similarity in Bio-Ontologies"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
java-runtime
perl
r-circlize
r-complexheatmap
r-getoptlong
r-globaloptions
r-igraph
r-matrixstats
r-polychrome
r-rcpp
r-s4vectors
r-shiny
r-xml2
)
checkdepends=(
r-go.db
r-org.hs.eg.db
r-proxyc
r-testthat
)
optdepends=(
r-annotationdbi
r-annotationhub
r-biocmanager
r-diagrammer
r-go.db
r-interactivecomplexheatmap
r-jsonlite
r-knitr
r-org.hs.eg.db
r-png
r-proxyc
r-ragg
r-simplifyenrichment
r-testthat
r-uniprotkeywords
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2f4a9eed9ebde10c3aa703095b529994')
b2sums=('b1d3db9ea0fa0cfbf9e79f9c616087d3cc2dcf184a99999d189a2854f46b43cea11f2fa064c36cda83b48fe1582f2b2f31cfb13905b086ce300b671271a8be1c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla test-all.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|