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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=simpleSeg
_pkgver=1.4.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="A package to perform simple cell segmentation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-cytomapper
r-ebimage
r-s4vectors
r-spatstat.geom
r-summarizedexperiment
r-terra
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bd0a780ed7dfde71db7ecdf2cee30b0c')
b2sums=('de6403171491a4bc381526567e4ef3a9857f7ee823dd28cdc41cb5bff45f653fa8d372790a976f21c360f3a4e85d0e3c37dd9f8c17917b28ee586def36e52973')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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