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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=slalom
_pkgver=1.20.2
pkgname=r-${_pkgname,,}
pkgver=1.20.2
pkgrel=1
pkgdesc='Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-bh
  r-ggplot2
  r-gseabase
  r-rcpp
  r-rcpparmadillo
  r-rsvd
  r-singlecellexperiment
  r-summarizedexperiment
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rhdf5
  r-rmarkdown
  r-scater
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('dd0acb921ebfa96d168ee5abc8d38ce2071a5d4526c70c793def4f83e8439241')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: