PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=slingshot
_pkgver=2.8.0
pkgname=r-${_pkgname,,}
pkgver=2.8.0
pkgrel=1
pkgdesc='Tools for ordering single-cell sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-igraph
  r-matrixstats
  r-princurve
  r-s4vectors
  r-singlecellexperiment
  r-summarizedexperiment
  r-trajectoryutils
)
optdepends=(
  r-biocgenerics
  r-biocstyle
  r-clusterexperiment
  r-covr
  r-delayedmatrixstats
  r-knitr
  r-mclust
  r-mgcv
  r-rcolorbrewer
  r-rgl
  r-rmarkdown
  r-testthat
  r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a7a329de427529c09fa9144f5a2822e04fe7b06219a7a078dbec3a8b5e3e21f7')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: