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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SomaticSignatures
_pkgver=2.40.0
pkgname=r-${_pkgname,,}
pkgver=2.40.0
pkgrel=1
pkgdesc='Somatic Signatures'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-biostrings
r-genomeinfodb
r-genomicranges
r-ggbio
r-ggplot2
r-iranges
r-nmf
r-pcamethods
r-proxy
r-reshape2
r-s4vectors
r-variantannotation
)
optdepends=(
r-bsgenome.hsapiens.1000genomes.hs37d5
r-fastica
r-ggdendro
r-knitr
r-parallel
r-somaticcanceralterations
r-sva
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e882e842bd7f5cb627560fef41c69aa97aa3ea0679874cb8edb37b5b9513767b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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