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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Robert Greener <me@r0bert.dev>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
_pkgname=spam
_pkgver=2.10-0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="SPArse Matrix"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('LGPL-2.0-only OR BSD-3-Clause')
depends=(
blas
lapack
r-dotcall64
r-rcpp
)
makedepends=(
gcc-fortran
)
checkdepends=(
r-testthat
)
optdepends=(
r-fields
r-knitr
r-r.rsp
r-rmarkdown
r-spam64
r-testthat
r-truncdist
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('544bbc0a7ae76ef34ed01bf61c666f82')
b2sums=('5a112675245f0937367334ad0f86330f7813ac51b8a2e0690a464bd8d925048214e55d96a0a18933daee2551a93fb8d553b6c27bbb8e25106366b799a882f384')
prepare() {
# skip tests that require r-fields
sed -i "/require('fields')/i skip_if_not_installed('fields')" \
"$_pkgname/tests/testthat/test-rmvnorm.R"
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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