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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=spaSim
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Spatial point data simulator for tissue images"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-dplyr
r-ggplot2
r-rann
r-spatialexperiment
r-spatstat.geom
r-spatstat.random
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-markdown
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('eb8d64b8e246faafd96e8e2669893284')
b2sums=('9ccb4c298acbfc1c8dfc0272f7f4c62823545f6baaeef96ab73e3256f43c5f2faeda8e0b23af6cb78993168196cdfa44a52e9c98bd5afe747af36fecf04be8d6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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