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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=spatialHeatmap
_pkgver=2.8.5
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Creating spatial heatmaps from R and Shiny"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-data.table
r-dplyr
r-edger
r-genefilter
r-ggplot2
r-ggplotify
r-gplots
r-gridextra
r-grimport
r-igraph
r-reshape2
r-rsvg
r-s4vectors
r-scater
r-scran
r-scuttle
r-shiny
r-shinydashboard
r-singlecellexperiment
r-spscomps
r-summarizedexperiment
r-tibble
r-xml2
)
checkdepends=(
r-biocfilecache
r-biocgenerics
r-deseq2
r-expressionatlas
r-flashclust
r-runit
r-wgcna
)
optdepends=(
r-annotationdbi
r-av
r-biobase
r-biocfilecache
r-biocgenerics
r-biocparallel
r-biocsingular
r-biocstyle
r-cachem
r-dendextend
r-deseq2
r-dt
r-dynamictreecut
r-expressionatlas
r-flashclust
r-geoquery
r-ggdendro
r-hdf5array
r-htmltools
r-htmlwidgets
r-kableextra
r-knitr
r-limma
r-magick
r-memoise
r-org.at.tair.db
r-org.dm.eg.db
r-org.dr.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-plotly
r-proc
r-rappdirs
r-rhdf5
r-rmarkdown
r-rols
r-rtsne
r-runit
r-seurat
r-shinybs
r-shinyjs
r-shinywidgets
r-sortable
r-sparkline
r-spsutil
r-upsetr
r-uwot
r-visnetwork
r-wgcna
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2c5ee52628039f8293fd20bdd2874004')
b2sums=('e38b0e00342cdfab0d7ba84118dc353f88b7155fe849a0803af6f8fb1efdb0874bb26bf01590a28e0f8bae69eedd6a73ae943c745ed1b11e42f527979c5a49f4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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