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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=SPIAT
_pkgver=1.6.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Spatial Image Analysis of Tissues"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-apcluster
r-dbscan
r-dittoseq
r-dplyr
r-ggplot2
r-gridextra
r-gtools
r-mmand
r-pracma
r-rann
r-raster
r-reshape2
r-rlang
r-sp
r-spatialexperiment
r-spatstat.explore
r-spatstat.geom
r-summarizedexperiment
r-tibble
r-vroom
)
checkdepends=(
r-alphahull
r-complexheatmap
r-elsa
r-plotly
r-rtsne
r-testthat
)
optdepends=(
r-alphahull
r-biocstyle
r-complexheatmap
r-elsa
r-knitr
r-pkgdown
r-plotly
r-rmarkdown
r-rtsne
r-testthat
r-umap
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3b65e884ef0e3692a1d62f908b2f3a67')
b2sums=('461d1662e868281bcb555305d77a28420735a699894ac93a0955e55e85a9f7b4916ff04c448bee77667957898e6d692cd37cb386d5f9b9103bc90e692fcefb44')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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