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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=spicyR
_pkgver=1.18.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Spatial analysis of in situ cytometry data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-biocparallel
r-classifyr
r-cli
r-concaveman
r-data.table
r-dplyr
r-ggforce
r-ggplot2
r-lmertest
r-magrittr
r-pheatmap
r-rlang
r-s4vectors
r-scam
r-singlecellexperiment
r-spatialexperiment
r-spatstat.explore
r-spatstat.geom
r-summarizedexperiment
r-tibble
r-tidyr
r-ggthemes
r-coxme
r-lifecycle
r-ggh4x
r-ggnewscale
r-simpleseg
)
optdepends=(
r-biocstyle
r-imcrtools
r-knitr
r-pkgdown
r-rmarkdown
r-spatialdatasets
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('66c6fb95b346743a735c879245a6f021')
b2sums=('770506dad549d90217fade42a6751a11184b5c50b617fcf558f5361ec197576ee9a31dd878fd174a249a4214d970bd7dc5bdef245c62f7afcfba0f35344d7e44')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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