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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=sSNAPPY
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Single Sample directioNAl Pathway Perturbation analYsis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-dplyr
r-edger
r-ggforce
r-ggplot2
r-ggraph
r-graphite
r-gtools
r-igraph
r-magrittr
r-org.hs.eg.db
r-pheatmap
r-reshape2
r-rlang
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
checkdepends=(
r-cowplot
r-testthat
)
optdepends=(
r-biocmanager
r-biocstyle
r-colorspace
r-cowplot
r-dt
r-htmltools
r-knitr
r-pander
r-patchwork
r-rmarkdown
r-spelling
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('19c4be1cf2891d0fe3497ebb4bfcbf2f')
b2sums=('dff93ead85889f304cc3b6ff278938e6aa4b3cafcdee9ece8d185a9c489566aaae7df9ac3a4afac0bef33df9e7cd057899dc649c800ca3b61de8b48818f06058')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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