blob: 0f2135ac1a1e7b17b6e59f450a2e86cad1c1f16f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=standR
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Spatial transcriptome analyses of Nanostring's DSP data in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biobase
r-biocgenerics
r-dplyr
r-edger
r-ggalluvial
r-ggplot2
r-limma
r-mclustcomp
r-patchwork
r-readr
r-rlang
r-ruv
r-ruvseq
r-s4vectors
r-singlecellexperiment
r-spatialexperiment
r-summarizedexperiment
r-tibble
r-tidyr
)
checkdepends=(
r-experimenthub
r-ggpubr
r-ggrepel
r-scater
r-testthat
)
optdepends=(
r-experimenthub
r-ggpubr
r-ggrepel
r-knitr
r-rmarkdown
r-scater
r-testthat
r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('730c76dec4835c7cbdd58a59c3179677')
b2sums=('79650bbcdb2a624540605552baab488dcf94488a62f7598bf4d8b4cdca7533e1bc57f87507ae2e2bcac53e57bb813ba4c6fc650061dcf5738d359bf4e8506a60')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|