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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Statial
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A package to identify changes in cell state relative to spatial associations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-concaveman
r-data.table
r-dplyr
r-ggplot2
r-limma
r-magrittr
r-plotly
r-purrr
r-ranger
r-s4vectors
r-singlecellexperiment
r-spatialexperiment
r-spatstat.explore
r-spatstat.geom
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-classifyr
r-ggsurvfit
r-knitr
r-lisaclust
r-spicyr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2c77e967b17130dd31b95ecf030b4fa8')
b2sums=('0d02fb255a51254884b5a8ae42ab4307aa4c65534abb6aeadfda99ae3a7362187b04e316fd29a4b647142152cd0ec661906841f1274e24673bca25bd07a22be3')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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