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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=stJoincount
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Join count statistic for quantifying spatial correlation between clusters"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-dplyr
r-ggplot2
r-magrittr
r-pheatmap
r-raster
r-seurat
r-sp
r-spatialexperiment
r-spdep
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7fec8bfa6c6e4c7531504f5ec466158c')
b2sums=('dc59858ad14eea22c48edf599e792706983b7199f515e9cd0f3d2ab3bce3dea051569ab64a8d72e5c4e71d35f93fa278df1fdfd4ad642dbd64d0ca9559ca03de')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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