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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=SummarizedExperiment
_bcver=1.32.0
pkgname=r-${_bcname,,}
pkgdesc="SummarizedExperiment container"
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
pkgver=${_bcver//[:-]/.}
pkgrel=1
arch=("any")
license=("Artistic2.0")
depends=(
"r>=4.0.0"
"r-biobase"
"r-biocgenerics>=0.37.0"
"r-delayedarray>=0.27.1"
"r-genomeinfodb>=1.13.1"
"r-genomicranges>=1.41.5"
"r-iranges>=2.23.9"
"r-matrixgenerics>=1.1.3"
"r-s4arrays>=1.1.1"
"r-s4vectors>=0.33.7"
)
optdepends=(
"r-airway>=1.15.1"
"r-annotate"
"r-annotationdbi"
"r-biocstyle"
"r-digest"
"r-genomicfeatures"
"r-hdf5array>=1.7.5"
"r-hgu95av2.db"
"r-jsonlite"
"r-knitr"
"r-rhdf5"
"r-rmarkdown"
"r-runit"
"r-testthat"
"r-txdb.hsapiens.ucsc.hg19.knowngene"
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
b2sums=("47132eb8d9fb41493519528927aff8324e2e3a858747765396cdb4f4900ff4caeb67e51781cfdf1d6fc97e580b8b13289a869c1f115ddec69b7067fdbacebce0")
build() {
R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
}
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