blob: 1b57cd20316ce39b718e22b84a0d624119c1cdea (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tadar
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome Analysis of Differential Allelic Representation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-matrixgenerics
r-rlang
r-rsamtools
r-s4vectors
r-variantannotation
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-limma
r-rmarkdown
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('10f5349af7e634695d7f22e6f90d371d')
b2sums=('4d164c3c396c71bf721adfee6baf02a14c79e70491505dbac4bd2f3d7c2a33e84fdf2463e2f56865cc3a24086aa6e78c35b4502e9f5e8f9803c792ec7a69ed92')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|