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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tadar
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome Analysis of Differential Allelic Representation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-lifecycle
r-matrixgenerics
r-rlang
r-rsamtools
r-s4vectors
r-seqinfo
r-variantannotation
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-limma
r-rmarkdown
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d889b1dd968c9dbc9cb6f08a963184c4')
b2sums=('c19fb217058be79d685a99076469e47ede737fdaf5c301210ae6c38f59f55d9bdc96020a0a731c4245493a2927e1a6d0d20c7f0e0580970602eaa62458885e52')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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