blob: 7db3aa7fad4d525346378a2b30df3397916e58ba (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tadar
_pkgver=1.2.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome Analysis of Differential Allelic Representation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-matrixgenerics
r-rlang
r-rsamtools
r-s4vectors
r-variantannotation
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-limma
r-rmarkdown
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('63b8401414abc199507181f5eec9dae5')
b2sums=('0cd6671c60e92feae41c55402eaebf89dc2be04a04c3991dfdb4f41eeb41f08ac2b4c593078248ce75bfa9cb0b28b63f34b4b1799b70f913a99cff80b674930e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|