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# system requirements: Primer3 (>= 2.5.0), BLAST+ (>=2.6.0)
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=TAPseq
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='Targeted scRNA-seq primer design for TAP-seq'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-dplyr
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-s4vectors
r-tidyr
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-cowplot
r-ggplot2
r-glmnet
r-knitr
r-matrix
r-rmarkdown
r-rtracklayer
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('719cba203d2a4efd95277fc55b0b01d9728e293b376b7421d01159868c02e75b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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