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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=TBSignatureProfiler
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='Profile RNA-Seq Data Using TB Pathway Signatures'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-assign
r-biocparallel
r-complexheatmap
r-deseq2
r-dt
r-edger
r-gdata
r-ggplot2
r-gsva
r-magrittr
r-rcolorbrewer
r-reshape2
r-rlang
r-rocit
r-s4vectors
r-singscore
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-caret
r-circlize
r-class
r-covr
r-dplyr
r-e1071
r-glmnet
r-hgnchelper
r-impute
r-knitr
r-lintr
r-mass
r-plyr
r-proc
r-randomforest
r-rmarkdown
r-shiny
r-spelling
r-sva
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f34a44de804cd0d90d95d6e6ef02f245e3c289e4d37415da31a89a6c794b4dee')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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