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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=TCGAbiolinks
_pkgver=2.30.4
pkgname=r-${_pkgname,,}
pkgver=2.30.4
pkgrel=1
pkgdesc='TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biomart
r-data.table
r-downloader
r-dplyr
r-genomicranges
r-ggplot2
r-httr
r-iranges
r-jsonlite
r-knitr
r-plyr
r-purrr
r-r.utils
r-readr
r-rvest
r-s4vectors
r-stringr
r-summarizedexperiment
r-tcgabiolinksgui.data
r-tibble
r-tidyr
r-xml
r-xml2
)
optdepends=(
r-affy
r-annotationhub
r-biobase
r-biocstyle
r-c3net
r-circlize
r-clusterprofiler
r-complexheatmap
r-consensusclusterplus
r-devtools
r-dnet
r-doparallel
r-edaseq
r-edger
r-experimenthub
r-genefilter
r-ggrepel
r-grid
r-gridextra
r-igraph
r-jpeg
r-limma
r-maftools
r-minet
r-parallel
r-parmigene
r-pathview
r-png
r-rmarkdown
r-scales
r-sesame
r-seurat
r-suprahex
r-survival
r-survminer
r-sva
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4849e46dc74a38c2273dbd390e19cb67e9051610113147d90edef5bed95b202f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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