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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TENxIO
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Import methods for 10X Genomics files"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocbaseutils
r-biocgenerics
r-biocio
r-genomeinfodb
r-genomicranges
r-matrixgenerics
r-r.utils
r-rcurl
r-readr
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
)
checkdepends=(
r-hdf5array
r-raggedexperiment
r-rhdf5
r-rsamtools
r-tinytest
)
optdepends=(
r-biocstyle
r-droplettestfiles
r-experimenthub
r-hdf5array
r-knitr
r-raggedexperiment
r-rhdf5
r-rmarkdown
r-rsamtools
r-tinytest
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c057806cbd49aa1ef13d84a3650e2d1d')
b2sums=('aeb6ffc5bf986440aa0b9b5456b0c44fd4d80ba5a02d27816cdc5ab2a5afdead9e6934d31a972d4fb8a8afb112bd6db9c49f2d55495dd3391b61d43563a43318')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla tinytest.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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