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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tidyHeatmap
_pkgver=1.8.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="A Tidy Implementation of Heatmap"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-3.0-only')
depends=(
r-circlize
r-complexheatmap
r-dendextend
r-dplyr
r-lifecycle
r-magrittr
r-patchwork
r-purrr
r-rcolorbrewer
r-rlang
r-tibble
r-tidyr
r-viridis
)
checkdepends=(
r-spelling
r-testthat
r-vdiffr
)
optdepends=(
r-biocmanager
r-covr
r-forcats
r-ggplot2
r-knitr
r-qpdf
r-rmarkdown
r-roxygen2
r-spelling
r-testthat
r-vdiffr
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('043abb0854964eceb2fccc711ae64a35')
b2sums=('1a289e0b1729273e5d30cc684b0d64e3e240c26856009ce456c3a5770572151ac3ad52170e7fb3111afd3916182704a406311fc560ed1e667116c4e62946f99f')
prepare() {
# skip failing snapshot tests
sed -e '/"grouped double and annotated plot"/a\\tskip("fails")' \
-e '/"grouped and annotated plot both vertical and horizontal"/a\\tskip("fails")' \
-e '/"pass arguments with ..."/a\\tskip("fails")' \
-e '/"multi-type"/a\\tskip("fails")' \
-e '/"legend"/a\\tskip("fails")' \
-e '/"size annotation"/a\\tskip("fails")' \
-e '/"wrap heatmap for patchwork"/a\\tskip("fails")' \
-i "$_pkgname/tests/testthat/tests.R"
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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