summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: ebd9e918d537e35337b92845fb7d1e9abd8523a3 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=tLOH
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
  r
  r-bestnormalize
  r-data.table
  r-depmixs4
  r-dplyr
  r-genomicranges
  r-ggplot2
  r-matrixgenerics
  r-naniar
  r-purrr
  r-scales
  r-stringr
  r-variantannotation
)
optdepends=(
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('61d3e9f7f7237e02ceb7ef75eadf4a66cd27c0307392ffc555c523e7b2060a65')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et: