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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tomoseqr
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="R Package for Analyzing Tomo-seq Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-animation
r-biocfilecache
r-dplyr
r-ggplot2
r-plotly
r-purrr
r-readr
r-shiny
r-stringr
r-tibble
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('103b5393aaa6ab1dc037f20f36ae9d5f')
b2sums=('905951aca786b3717243c45e2212e3c5c0db9ab2a4f4d0afdb74bcc248912aa3924def73f32774dfb7b48c104e0fff4d76e7cb92269fca92b51e7c9fbb4591a6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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