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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TOP
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="TOP Constructs Transferable Model Across Gene Expression Platforms"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-caret
r-classifyr
r-directpa
r-doparallel
r-dplyr
r-ggnewscale
r-ggplot2
r-ggraph
r-ggrepel
r-ggthemes
r-glmnet
r-hmisc
r-igraph
r-latex2exp
r-limma
r-magrittr
r-plotly
r-proc
r-purrr
r-reshape2
r-statmod
r-stringr
r-tibble
r-tidygraph
r-tidyr
)
optdepends=(
r-biobase
r-biocstyle
r-curatedovariandata
r-ggbeeswarm
r-ggsci
r-knitr
r-rmarkdown
r-survminer
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3f82d34d4cc5baa5f0db6c423a1c7f2b')
b2sums=('4520f1eaf9b50009f0552e6142e73c8e35c86fb9717b4b0afff9c64aa537a93bbd5030c662379fe22f4112d1d9b7161a7f41227803b333f46c23531bf846635d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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