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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=trackViewer
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-annotationdbi
r-biocgenerics
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-grimport
r-gviz
r-htmlwidgets
r-igraph
r-interactionset
r-iranges
r-plotrix
r-rhdf5
r-rsamtools
r-rtracklayer
r-s4vectors
r-scales
r-strawr
r-txdbmaker
)
optdepends=(
r-biocstyle
r-biomart
r-htmltools
r-httr
r-knitr
r-motifstack
r-org.hs.eg.db
r-rmarkdown
r-runit
r-txdb.hsapiens.ucsc.hg19.knowngene
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('345c5b2adf6e31e2aee1335391d07d48')
b2sums=('82d18d278509969ff57344980481c577f00bbaea59d88fb56cf558d581d6978af1659be2cd74e670a2cd06fc56258c040d36fb1e6069c1bee7a3a817ed0415fa')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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