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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=tradeSeq
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='trajectory-based differential expression analysis for sequencing data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-biocparallel
r-edger
r-ggplot2
r-igraph
r-magrittr
r-matrixstats
r-pbapply
r-princurve
r-rcolorbrewer
r-s4vectors
r-singlecellexperiment
r-slingshot
r-summarizedexperiment
r-tibble
r-trajectoryutils
r-viridis
)
optdepends=(
r-clusterexperiment
r-covr
r-delayedmatrixstats
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('7297d01b394cb2552c9705b6081e954d2d1a367aeaad5d18fe075b205694601a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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