blob: ac4cb8b287ccd44907914302f0dd337478d2073c (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TREG
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-purrr
r-rafalib
r-summarizedexperiment
)
checkdepends=(
r-dplyr
r-testthat
)
optdepends=(
r-biocfilecache
r-biocstyle
r-dplyr
r-ggplot2
r-knitr
r-pheatmap
r-refmanager
r-rmarkdown
r-sessioninfo
r-singlecellexperiment
r-testthat
r-tibble
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6ab2e5ab222d993ba7425f008a1e7bf2')
b2sums=('780eb8da9c7eb38d3ca2f2e243e4cebe81b8a6dd1d7f6a31e19388438296fc1849373f68eeb3e9418159720959fd202ea02b12ccb494ca29a03fa98dac77fa82')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|