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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=TVTB
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=4
pkgdesc='TVTB: The VCF Tool Box'
arch=('any')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationfilter
r-biocgenerics
r-biocparallel
r-biostrings
r-ensembldb
r-ensemblvep
r-genomeinfodb
r-genomicranges
r-ggally
r-ggplot2
r-gviz
r-iranges
r-limma
r-reshape2
r-rsamtools
r-s4vectors
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-covr
r-dt
r-ensdb.hsapiens.v75
r-knitr
r-pander
r-rmarkdown
r-rtracklayer
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1af5da609ec7b34cc10f5fe898bebf786f4fac573044fee992c86fe15df4dd00')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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