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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=TVTB
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="The VCF Tool Box"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationfilter
r-biocgenerics
r-biocparallel
r-biostrings
r-ensembldb
r-ensemblvep
r-genomeinfodb
r-genomicranges
r-ggally
r-ggplot2
r-gviz
r-iranges
r-limma
r-reshape2
r-rsamtools
r-s4vectors
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-covr
r-dt
r-ensdb.hsapiens.v75
r-knitr
r-pander
r-rmarkdown
r-rtracklayer
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('64da00f3c21bf3f9a82dc32e451395a1')
b2sums=('e9383fe58a3af14f9b76c2bb759e07a9ba4181daeeea7f2141744be3991226adedd33e067784adf942749ab025d40432bdd02d16674d1535bdb1fc0618c3a13d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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