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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=txcutr
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome CUTteR"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotationdbi
r-biocgenerics
r-biocparallel
r-biostrings
r-genomicfeatures
r-genomicranges
r-iranges
r-rtracklayer
r-s4vectors
r-txdbmaker
)
optdepends=(
r-biocstyle
r-bsgenome.scerevisiae.ucsc.saccer3
r-knitr
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
r-txdb.scerevisiae.ucsc.saccer3.sgdgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6e830a8e90d7da952dde1258e9bef3e9')
b2sums=('5fa080f42dc081381c4ceca021157b585516f4e3f6412769db37f38502d99809a02e1181965b34c09e6e4a6e556fdb428383778dcc03a3c61ca71b8744f38909')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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