PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=txcutr
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome CUTteR"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-annotationdbi
  r-biocgenerics
  r-biocparallel
  r-biostrings
  r-genomicfeatures
  r-genomicranges
  r-iranges
  r-rtracklayer
  r-s4vectors
  r-txdbmaker
)
optdepends=(
  r-biocstyle
  r-bsgenome.scerevisiae.ucsc.saccer3
  r-genomeinfodbdata
  r-knitr
  r-refmanager
  r-rmarkdown
  r-sessioninfo
  r-testthat
  r-txdb.scerevisiae.ucsc.saccer3.sgdgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('229fbf7026073c5a08bf614e8aa3ba82')
b2sums=('707b14c75db675ac82925043f6ddb985950ae7109065e7f136912768a9d9acc3d7563913ba82646d070d2f8c53b594cfa986fce7ed2d0685488cf53bb4e19bcd')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}