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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=tximeta
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcript Quantification Import with Automatic Metadata"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-annotationdbi
r-annotationhub
r-biocfilecache
r-biostrings
r-ensembldb
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-jsonlite
r-s4vectors
r-summarizedexperiment
r-tibble
r-txdbmaker
r-tximport
)
optdepends=(
r-deseq2
r-devtools
r-edger
r-fishpond
r-knitr
r-limma
r-org.dm.eg.db
r-rmarkdown
r-testthat
r-tximportdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('88246100f7d47be4b835a1fac4e02b4a')
b2sums=('1dae1c210d31e0ec9c2a7bf3455990329adad9a9fd81de147f9b66ddd5f8e9e44a150de672497afe3e78026b5894ecef4fb25f4651efc7be64fafd7824d16851')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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