blob: 9c11274780e55fceb112e548e94bdfcaaffdb4b3 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Ularcirc
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=1.20.0
pkgrel=1
pkgdesc='Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-annotationdbi
r-annotationhub
r-biocgenerics
r-biostrings
r-bsgenome
r-data.table
r-dt
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggrepel
r-gsubfn
r-mirbase.db
r-moments
r-organism.dplyr
r-plotgardener
r-r.utils
r-s4vectors
r-shiny
r-shinydashboard
r-shinyfiles
r-shinyjs
r-yaml
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-httpuv
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1126a68f1fb88d4d2cccbb056d6caa0344ae24fe93f0961b562d6cdd6b669bb8')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|