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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=UMI4Cats
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotate
r-biocfilecache
r-biocgenerics
r-biostrings
r-bsgenome
r-cowplot
r-deseq2
r-dplyr
r-fda
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-iranges
r-magick
r-magrittr
r-org.hs.eg.db
r-r.utils
r-rappdirs
r-rbowtie2
r-rcolorbrewer
r-regioner
r-reshape2
r-rlang
r-rsamtools
r-s4vectors
r-scales
r-shortread
r-stringr
r-summarizedexperiment
r-txdb.hsapiens.ucsc.hg19.knowngene
r-zoo
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-knitr
r-rmarkdown
r-testthat
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cff27b347777bd5cac76ec15bff66e1eda19eff6c374d3d10b03c53ccdd156a4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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