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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=variancePartition
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quantify and interpret drivers of variation in multilevel gene expression experiments"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-aod
r-biobase
r-biocparallel
r-corpcor
r-fancova
r-ggplot2
r-gplots
r-iterators
r-limma
r-lme4
r-lmertest
r-matrixstats
r-pbkrtest
r-rdpack
r-remacor
r-reshape2
r-rhpcblasctl
r-rlang
r-scales
)
checkdepends=(
r-biocgenerics
r-edger
r-rfast
r-runit
)
optdepends=(
r-ballgown
r-biocgenerics
r-biocstyle
r-cowplot
r-dendextend
r-deseq2
r-edger
r-knitr
r-pander
r-r2glmm
r-readr
r-rfast
r-rmarkdown
r-runit
r-statmod
r-tximport
r-tximportdata
r-zenith
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6166b37eba7db10f4e8bbf9044193c03')
b2sums=('b560920af31c71417053627beab9c7a05d021ae6130ff562da9abd877ad604c32e0d4cc55040933c0d29e77ee0d1bdfb992a72af68238e23344735eae744fb69')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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