blob: 9f2ba096020fd14e735c5270523f685ec5b70cd6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ViSEAGO
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-annotationforge
r-biomart
r-data.table
r-dendextend
r-diagrammer
r-dt
r-dynamictreecut
r-fgsea
r-ggplot2
r-go.db
r-gosemsim
r-heatmaply
r-htmlwidgets
r-igraph
r-plotly
r-processx
r-r.utils
r-rcolorbrewer
r-scales
r-topgo
r-upsetr
)
optdepends=(
r-biocmanager
r-biocstyle
r-corrplot
r-htmltools
r-knitr
r-limma
r-org.mm.eg.db
r-remotes
r-rgraphviz
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('26f084c11f0e1179432abf0e353c4456e73ef904fc58b8cfeaaf36bb11ea9819')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|