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# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
pkgname=sga
pkgver=0.10.15
pkgrel=1
pkgdesc="de novo sequence assembler using string graphs"
arch=('x86_64' 'i686')
url="https://github.com/jts/sga"
license=('GPL3')
depends=('bamtools' 'jemalloc' 'python')
makedepends=('sparsehash')
source=("$pkgname-$pkgver.tar.gz::https://github.com/jts/sga/archive/v$pkgver.tar.gz"
'configure-rpath.patch')
md5sums=('990aed1593f8072650c6366e5cf32519'
'SKIP')
prepare() {
cd $srcdir/$pkgname-$pkgver
patch -p1 -i $srcdir/configure-rpath.patch
cd src
./autogen.sh
}
build() {
cd $srcdir/$pkgname-$pkgver/src
./configure --prefix=/usr --with-bamtools=/usr --with-jemalloc=/usr
make
}
package() {
cd $srcdir/$pkgname-$pkgver/src
make DESTDIR=$pkgdir install
}
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