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# Maintainer: Dimitris Kiziridis <ragouel at outlook dot com>
# Contributor: Sauliusl <luksaulius[at]gmail[dotcom]>
pkgname=sratoolkit
pkgver=2.10.5
pkgrel=1
pkgdesc="The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives"
arch=('x86_64')
url="http://www.ncbi.nlm.nih.gov/books/NBK158900/"
license=('custom')
groups=('sequence_analysis')
depends=('libxml2' 'gcc-libs-multilib' 'fuse')
source=("http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${pkgver//_/-}/sratoolkit.${pkgver//_/-}-ubuntu64.tar.gz"
"https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE")
md5sums=('d68cd7ec55b47269853f9f77adfaccf8'
'9ba753649b72f0bbcac5741536c6953d')
package() {
pkgverdash=${pkgver//_/-}
install -d ${pkgdir}/usr/bin
install -d ${pkgdir}/usr/share/doc/${pkgname}
install -d ${pkgdir}/usr/share/doc/${pkgname}/example/perl
install -dm644 ${pkgdir}/usr/share/${pkgname}/
cp -ar $srcdir/sratoolkit.$pkgverdash-ubuntu64/schema ${pkgdir}/usr/share/${pkgname}/
cp -ar $srcdir/sratoolkit.$pkgverdash-ubuntu64/bin/* ${pkgdir}/usr/bin/
install -Dm755 $srcdir/sratoolkit.$pkgverdash-ubuntu64/example/perl/* ${pkgdir}/usr/share/doc/${pkgname}/example/perl/
install -Dm644 $srcdir/sratoolkit.$pkgverdash-ubuntu64/README* ${pkgdir}/usr/share/doc/${pkgname}
install -Dm644 $srcdir/LICENSE ${pkgdir}/usr/share/licenses/${pkgname}
}
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