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# Maintainer: sukanka <su975853527 [AT] gmail.com>
# Contributor: Ido Rosen <ido@kernel.org>
pkgname='stanc'
pkgdesc="A package for obtaining Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo."
pkgver=2.34.1
pkgrel=1
arch=('i686' 'x86_64')
url='https://mc-stan.org/'
license=('BSD')
depends=('gcc-libs')
makedepends=('texlive-bin' 'texlive-core' 'doxygen'
# needed if compile against system library
'gtest' 'benchmark' 'sundials' 'boost' 'eigen' 'stanmath'
'python-cpplint' 'opencl-headers' 'rapidjson'
'cli11' 'tbb'
'inetutils'
)
provides=("cmdstan")
source=("stanc-${pkgver}.tar.gz::https://github.com/stan-dev/cmdstan/archive/refs/tags/v${pkgver}.tar.gz"
"stan-${pkgver}.tar.gz::https://github.com/stan-dev/stan/archive/refs/tags/v${pkgver}.tar.gz"
local
cli11.patch
)
sha512sums=('b18ae976eb4dfc8ed1bf00396bb32cc9f2cae56f7409e6517dccf1acb621c5613463426bb85547031cd7c4d092e82a0c53674ba3fa665991ef46949608d39a37'
'c78e0ae4b2a47cfcee6816c3b1fd147cec8f67ae06015e65200b9eb1082229b8f2433e3218b71423391f47feb149d94c355503f7dc4b9ab84c512382560037e6'
'83d164dc8ac6f53980874ee2654dc5a88610ec58763624534cdd169cec0e1639875a2eb470bbf00c4ad5073dc37aea070f87c137c8f080d817fd0983f262acd6'
'fff32eedf0f2044c3ffdd0e6e83927d1b6b535f7d2f960ff20a2f6e84b5b825ec90ea3db5c7bd5cf67f6b2079fe1a7fac2529d5379af931175cefac44681700b')
prepare(){
cp -rf "${srcdir}/stan-${pkgver/_/-}"/* "${srcdir}/cmdstan-${pkgver/_/-}/stan/"
cd "${srcdir}/cmdstan-${pkgver/_/-}"
patch --strip=1 < ../cli11.patch
cp ${srcdir}/local make/local
cp ${srcdir}/local stan/make/local
sed -i 's|CLI11/CLI11.hpp|CLI/CLI.hpp|g' src/cmdstan/stansummary.cpp
}
build() {
cd "${srcdir}/cmdstan-${pkgver/_/-}"
export LDFLAGS="-ltbb"
export CXXFLAGS="-fPIC -Isrc -Istan/src -I/usr/include/eigen3 -D_REENTRANT -DTBB_INTERFACE_NEW"
make build
}
package() {
cd "${srcdir}/cmdstan-${pkgver/_/-}"
# Stan's makefile doesn't have a make install command...
# Install binaries:
install -dm755 "${pkgdir}/usr/bin"
install -m755 bin/stanc "${pkgdir}/usr/bin"
ln -s /usr/bin/stanc "${pkgdir}/usr/bin/cmdstan"
install -Tm755 bin/diagnose "${pkgdir}/usr/bin/standiagnose"
install -Tm755 bin/print "${pkgdir}/usr/bin/stanprint"
install -Tm755 bin/stansummary "${pkgdir}/usr/bin/stansummary"
install -d "${pkgdir}/usr/include/stan"
install -d "${pkgdir}/usr/include/cmdstan"
cd "stan/src"
find . -iregex './stan.*.hpp$' -type f -exec install -DTm644 "{}" "${pkgdir}/usr/include/{}" \;
cd ../..
cd "src"
find . -iregex './cmdstan.*.hpp$' -type f -exec install -DTm644 "{}" "${pkgdir}/usr/include/{}" \;
cd ..
# Install LICENSE file:
install -dm755 "${pkgdir}/usr/share/licenses/stan"
cp -r "stan/licenses/." "${pkgdir}/usr/share/licenses/stan/."
}
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