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# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com>
pkgname=star-cshl
pkgver=2.7.11b
pkgrel=1
pkgdesc="STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays"
arch=("x86_64")
url="https://github.com/alexdobin/STAR"
license=("GPL3")
makedepends=('vim')
source=("$pkgname-$pkgver.tar.gz::https://github.com/alexdobin/STAR/archive/${pkgver}.tar.gz")
sha256sums=('3f65305e4112bd154c7e22b333dcdaafc681f4a895048fa30fa7ae56cac408e7')
build() {
cd "$srcdir/STAR-${pkgver}/source"
make STAR
mv STAR STARshort
make clean
make STARlong
}
package() {
cd "$srcdir/STAR-${pkgver}/source"
install -Dm755 STARshort "$pkgdir/usr/bin/STAR"
install -Dm755 STARlong "$pkgdir/usr/bin/STARlong"
install -Dm644 parametersDefault "$pkgdir/usr/share/doc/star-cshl/parameters"
cd "$srcdir/STAR-${pkgver}/doc"
install -Dm644 STARmanual.pdf "$pkgdir/usr/share/doc/star-cshl/STARmanual.pdf"
}
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