1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
|
# This master make file is based on the "old"
# systemvars.mk and externallibs.mk files from:
# apple-darwin13-llvm6.0
# linux_64-gcc4.4
# linux_64-gcc4.8
# get system type (Darwin, Linux)
SYSTYPE := $(shell uname -s)
#####################################################################
#
# System Vars (common)
#
#####################################################################
SHELL = /bin/sh
RM = /bin/rm
CP = /bin/cp
MV = /bin/mv
CHMOD = /bin/chmod
MKDIR = /bin/mkdir
INSTALL = install -p
TCLSH = /usr/bin/tclsh
DEPENDFLAGS = -MM
MACHDBGFLAGS = -g
#####################################################################
#
# External libs (common)
#
#####################################################################
FSLEXTLIB=${FSLDIR}/extras/lib
FSLEXTINC=${FSLDIR}/extras/include
FSLEXTBIN=${FSLDIR}/extras/bin
# CEPHES library
LIB_CEPHES = ${FSLEXTLIB}
INC_CEPHES = ${FSLEXTINC}/cephes
# GD library
LIB_GD = /usr/lib
INC_GD = /usr/include
# GDC library
LIB_GDC = ${FSLEXTLIB}
INC_GDC = ${FSLEXTINC}/libgdc
# GSL library
LIB_GSL = /usr/lib
INC_GSL = /usr/include/gsl
# PNG library
LIB_PNG = /usr/lib
INC_PNG = /usr/include/libpng16
# PROB library
LIB_PROB = ${FSLEXTLIB}
INC_PROB = ${FSLEXTINC}/libprob
# CPROB library
LIB_CPROB = ${FSLEXTLIB}
INC_CPROB = ${FSLEXTINC}/libcprob
# NEWRAN library
LIB_NEWRAN = ${FSLEXTLIB}
INC_NEWRAN = ${FSLEXTINC}/newran
# BOOST library
BOOSTDIR = ${FSLEXTINC}/boost
LIB_BOOST = /usr/lib
INC_BOOST = /usr/include/boost
# QWT library
QWTDIR = /usr
INC_QWT = ${QWTDIR}/include/qwt
LIB_QWT = ${QWTDIR}/lib
# FFTW3 library
LIB_FFTW3 = /usr/lib
INC_FFTW3 = /usr/include
# LIBXML2 library
INC_XML2 = /usr/include/libxml2
# LIBXML++ library
INC_XML++ = /usr/include/libxml++-2.6
INC_XML++CONF = /usr/lib/libxml++-2.6/include
# NEWMAT library/armadillo
INC_NEWMAT = ${FSLEXTINC}/armawrap/armawrap -DARMA_USE_LAPACK -DARMA_USE_BLAS -DARMA_64BIT_WORD
#####################################################################
#
# Darwin specific sys vars and ext libs
#
#####################################################################
ifeq ($(SYSTYPE), Darwin)
############### System Vars #####################################
CC = cc
CXX = c++
CXX11 = clang++
CSTATICFLAGS =
CXXSTATICFLAGS =
CFLAGS = -std=c99
ARCHFLAGS = -arch x86_64
ARCHLDFLAGS = -Wl,-search_paths_first -arch x86_64
PER_ARCH_CFLAGS_x86_64 = -msse3
OPTFLAGS = -O3
GNU_ANSI_FLAGS = -Wall -pedantic -ansi -Wno-long-long
ANSI_CFLAGS = ${GNU_ANSI_FLAGS}
ANSI_CXXFLAGS = ${GNU_ANSI_FLAGS} -ansi
RANLIB = ranlib
############### External Libs #####################################
# Armadillo library
LIB_NEWMAT = ${FSLEXTLIB} -llapack -lblas
# ZLIB library
LIB_ZLIB = /usr/lib
INC_ZLIB = /usr/include
# QT library
QTDIR = /usr
LIB_QT = ${QTDIR}/lib
INC_QT = ${QTDIR}/include/qt
# VTK library
VTKDIR_INC = /Users/cowboy/VTK7/include/vtk-7.0
VTKDIR_LIB = /Users/cowboy/VTK7/lib
VTKSUFFIX = -7.0
# CUDA library
CUDAVER := $(or $(CUDAVER),7.5)
CUDA_INSTALLATION = /Developer/NVIDIA/CUDA-${CUDAVER}
GENCODE_FLAGS = $(shell ${FSLDIR}/config/common/supportedGencodes.sh ${CUDA_INSTALLATION})
LIB_CUDA = ${CUDA_INSTALLATION}/lib
INC_CUDA = ${CUDA_INSTALLATION}/include
NVCC = ${CUDA_INSTALLATION}/bin/nvcc
#Project specific variables
EDDYBUILDPARAMETERS="cuda=1 CUDAVER=7.5" "cpu=1"
endif # if Darwin
#####################################################################
#
# Linux specific sys vars and ext libs
# Makefile auto-detects gcc version for Linux
#
#####################################################################
ifeq ($(SYSTYPE), Linux)
############### System Vars #####################################
CC = gcc
CXX = c++
CXX11 = c++
CSTATICFLAGS = -static
CXXSTATICFLAGS = -static
ARCHFLAGS = -m64
ARCHLDFLAGS = -Wl,-rpath,'$$ORIGIN/../lib'
PARALLELFLAGS = -fopenmp
OPTFLAGS = -g -O3 -fexpensive-optimizations ${ARCHFLAGS}
GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long -std=c++11
SGI_ANSI_FLAGS = -ansi -fullwarn
ANSI_FLAGS = ${GNU_ANSI_FLAGS}
RANLIB = echo
FSLML = ${FSLDIR}/bin/fslml
# CUDA development environment
CUDAVER := $(or $(CUDAVER),9.1)
#$(info $$CUDAVER is [${CUDAVER}])
CUDA_INSTALLATION = /opt/cuda
GENCODE_FLAGS = $(shell ${FSLDIR}/config/common/supportedGencodes.sh ${CUDA_INSTALLATION})
LIB_CUDA = ${CUDA_INSTALLATION}/lib64
INC_CUDA = ${CUDA_INSTALLATION}/include
NVCC = ${CUDA_INSTALLATION}/bin/nvcc
############### External Libs #####################################
# ZLIB library
LIB_ZLIB = /usr/lib
INC_ZLIB = /usr/include
# QT library
QTDIR = /usr/
LIB_QT = ${QTDIR}/lib
INC_QT = ${QTDIR}/include/qt
# VTK library
VTKDIR_INC = /usr/include/vtk
VTKDIR_LIB = /usr/lib
VTKSUFFIX =
# openblas
LIB_NEWMAT = /usr/lib -llapack -lopenblas
# get and then parse gcc version to run context specific builds
#GCCVER := $(shell gcc -dumpversion)
#GCCARR = $(subst ., ,$(GCCVER))
#$(info $(GCCVER))
#GCCMAJ = $(word 1, $(GCCARR))
#GCCMIN = $(word 2, $(GCCARR))
#GCCPAT = $(word 3, $(GCCARR))
#$(info GCC MAJ VER $(GCCMAJ))
#$(info GCC MIN VER $(GCCMIN))
#$(info GCC PAT VER $(GCCPAT))
# Alter this is host default c++ does not support C++11
HOSTNAME := $(shell hostname -s)
ifeq ($(HOSTNAME), caper)
CXX11 = scl enable devtoolset-2 -- c++
NVCC11 = scl enable devtoolset-2 -- ${CUDA_INSTALLATION}/bin/nvcc
endif # if GCCMIN
#Project specific variables
EDDYBUILDPARAMETERS="cuda=1 CUDAVER=8.0" "cuda=1 CUDAVER=9.1" "cpu=1"
endif # if Linux
|